PRIMED Publications in PGS catalog

PRIMED CC

2025-03-21

Summary

This table shows the number of unique publications based on PubmedID submitted to the PRIMED website that have records in PGS Catalog; the number of PRS developed in these publications; and the number of unique PRS evaluated in these publications. A single publication can include both development and evaluation of a PRS.

Summary N
Publications 30
PRS developed 267
PRS evaluated 281

List of PRS in PRIMED

This table shows the records of PRS from the PGS Catalog that have been either developed or evaluated in PRIMED publications. The columns “Developed by PRIMED” and “Evaluated in PRIMED” indicate whether the PRS was developed or evaluated in PRIMED publications, respectively.

pgs_id trait Developed by PRIMED Evaluated in PRIMED
PGS004636 High Density Lipoprotein Cholesterol Measurement x x
PGS004637 Low Density Lipoprotein Cholesterol Measurement x x
PGS004716 Serum Alanine Aminotransferase Measurement x x
PGS004781 Body Height x x
PGS004757 Diastolic Blood Pressure x x
PGS003725 Coronary Artery Disease x x
PGS004721 Aspartate Aminotransferase Measurement x x
PGS004714 Alkaline Phosphatase Measurement x x
PGS004720 Aspartate Aminotransferase Measurement x x
PGS004738 Breast Carcinoma x x
PGS004651 Low Density Lipoprotein Cholesterol Measurement x x
PGS004652 Triglyceride Measurement x x
PGS000014 Type 2 Diabetes Mellitus x
PGS004668 Total Cholesterol Measurement x x
PGS004704 Hba1c Measurement x x
PGS002783 Total Cholesterol Measurement x x
PGS000016 Atrial Fibrillation x
PGS004741 Urea Measurement x x
PGS004698 Coronary Artery Disease x x
PGS004628 High Density Lipoprotein Cholesterol Measurement x x
PGS004644 Low Density Lipoprotein Cholesterol Measurement x x
PGS004622 High Density Lipoprotein Cholesterol Measurement x x
PGS004646 Low Density Lipoprotein Cholesterol Measurement x x
PGS004815 Prostate Carcinoma x x
PGS002252 Colorectal Cancer x x
PGS004711 Alkaline Phosphatase Measurement x x
PGS004631 High Density Lipoprotein Cholesterol Measurement x x
PGS004819 Rheumatoid Arthritis x x
PGS004645 Low Density Lipoprotein Cholesterol Measurement x x
PGS004826 Red Cell Distribution Width x x
PGS004821 Erythrocyte Count x x
PGS004660 Triglyceride Measurement x x
PGS003399 Breast Carcinoma x x
PGS004836 Stroke x x
PGS004755 Diastolic Blood Pressure x x
PGS004783 Hypercholesterolemia x x
PGS004806 Neutrophil Count x x
PGS004726 Asthma x x
PGS004627 High Density Lipoprotein Cholesterol Measurement x x
PGS004852 Total Blood Protein Measurement x x
PGS004804 Monocyte Count x x
PGS003727 Coronary Artery Disease x x
PGS004629 High Density Lipoprotein Cholesterol Measurement x x
PGS004857 Leukocyte Quantity x x
PGS000007 Breast Carcinoma x
PGS003444 Type 2 Diabetes Mellitus x x
PGS004887 Type 2 Diabetes Mellitus x x
PGS003379 Prostate Specific Antigen Amount x x
PGS004659 Triglyceride Measurement x x
PGS004623 High Density Lipoprotein Cholesterol Measurement x x
PGS002237 Chronic Kidney Disease x x
PGS004793 Low Density Lipoprotein Cholesterol Measurement x x
PGS004782 Body Height x x
PGS004774 Hematocrit x x
PGS004760 Major Depressive Disorder x x
PGS004790 Hypothyroidism x x
PGS004812 Platelet Count x x
PGS004764 Eosinophil Count x x
PGS004797 Migraine Disorder x x
PGS004763 Eosinophil Count x x
PGS004814 Platelet Count x x
PGS004801 Monocyte Count x x
PGS004756 Diastolic Blood Pressure x x
PGS004893 Breast Carcinoma x x
PGS003586 Preeclampsia x x
PGS005098 Prostate Specific Antigen Amount x x
PGS004786 Hypertension x x
PGS004740 Urea Measurement x x
PGS004795 Melanoma x x
PGS004802 Monocyte Count x x
PGS004675 Total Cholesterol Measurement x x
PGS004813 Platelet Count x x
PGS004840 Type 2 Diabetes Mellitus x x
PGS004674 Total Cholesterol Measurement x x
PGS004697 Coronary Artery Disease x x
PGS004633 High Density Lipoprotein Cholesterol Measurement x x
PGS004758 Diastolic Blood Pressure x x
PGS004838 Type 2 Diabetes Mellitus x x
PGS004748 Serum Creatinine Amount x x
PGS004772 Hematocrit x x
PGS004842 Total Cholesterol Measurement x x
PGS004682 Body Height x x
PGS004792 Low Density Lipoprotein Cholesterol Measurement x x
PGS000018 Coronary Artery Disease x
PGS004683 Body Height x x
PGS004701 Hba1c Measurement x x
PGS004749 Serum Creatinine Amount x x
PGS004735 Body Mass Index x x
PGS004723 Asthma x x
PGS001355 Coronary Artery Disease x
PGS004773 Hematocrit x x
PGS004747 Serum Creatinine Amount x x
PGS003588 Systolic Blood Pressure x x
PGS004800 Migraine Disorder x x
PGS003378 Prostate Specific Antigen Amount x x
PGS004794 Low Density Lipoprotein Cholesterol Measurement x x
PGS004712 Alkaline Phosphatase Measurement x x
PGS004889 Chronic Kidney Disease x x
PGS004743 Coronary Artery Disease x x
PGS004656 Triglyceride Measurement x x
PGS004657 Triglyceride Measurement x x
PGS004719 Aspartate Aminotransferase Measurement x x
PGS004788 Hypertension x x
PGS004832 Systolic Blood Pressure x x
PGS004663 Triglyceride Measurement x x
PGS004667 Total Cholesterol Measurement x x
PGS004686 Body Height x x
PGS002784 Triglyceride Measurement x x
PGS004722 Aspartate Aminotransferase Measurement x x
PGS004750 Serum Creatinine Amount x x
PGS004837 Type 2 Diabetes Mellitus x x
PGS004833 Melanoma x x
PGS004640 Low Density Lipoprotein Cholesterol Measurement x x
PGS004766 Glaucoma x x
PGS002263 Uterine Fibroid x x
PGS004752 Smoking Status Measurement x x
PGS004796 Melanoma x x
PGS004643 Low Density Lipoprotein Cholesterol Measurement x x
PGS004732 Bilirubin Measurement x x
PGS002782 Non-High Density Lipoprotein Cholesterol Measurement x x
PGS004642 Low Density Lipoprotein Cholesterol Measurement x x
PGS004768 Gout x x
PGS004696 Coronary Artery Disease x x
PGS004733 Body Mass Index x x
PGS004856 Leukocyte Quantity x x
PGS004685 Body Height x x
PGS004638 Low Density Lipoprotein Cholesterol Measurement x x
PGS004803 Monocyte Count x x
PGS004855 Leukocyte Quantity x x
PGS003398 Breast Carcinoma x x
PGS004762 Eosinophil Count x x
PGS004841 Total Cholesterol Measurement x x
PGS004770 Hemoglobin Measurement x x
PGS004859 Type 2 Diabetes Mellitus x x
PGS003396 Breast Carcinoma x x
PGS003765 Prostate Carcinoma x x
PGS003445 Type 2 Diabetes Mellitus x x
PGS004744 Coronary Artery Disease x x
PGS004771 Hematocrit x x
PGS003587 Preeclampsia x x
PGS004849 Total Blood Protein Measurement x x
PGS000765 Colorectal Cancer x
PGS004745 Coronary Artery Disease x x
PGS004655 Triglyceride Measurement x x
PGS003460 Prostate Carcinoma x x
PGS002727 Asthma x x
PGS004811 Platelet Count x x
PGS004839 Type 2 Diabetes Mellitus x x
PGS004680 Total Cholesterol Measurement x x
PGS004731 Bilirubin Measurement x x
PGS004754 Smoking Status Measurement x x
PGS004843 Total Cholesterol Measurement x x
PGS004895 Estrogen-Receptor Negative Breast Cancer x x
PGS004775 High Density Lipoprotein Cholesterol Measurement x x
PGS005100 Prostate Specific Antigen Amount x x
PGS004647 Low Density Lipoprotein Cholesterol Measurement x x
PGS004654 Triglyceride Measurement x x
PGS004650 Low Density Lipoprotein Cholesterol Measurement x x
PGS002781 High Density Lipoprotein Cholesterol Measurement x x
PGS004662 Triglyceride Measurement x x
PGS003852 Colorectal Cancer x x
PGS004653 Triglyceride Measurement x x
PGS000024 Type 1 Diabetes Mellitus x
PGS004669 Total Cholesterol Measurement x x
PGS004713 Alkaline Phosphatase Measurement x x
PGS004851 Total Blood Protein Measurement x x
PGS004724 Asthma x x
PGS004845 Triglyceride Measurement x x
PGS004625 High Density Lipoprotein Cholesterol Measurement x x
PGS000013 Coronary Artery Disease x
PGS004678 Total Cholesterol Measurement x x
PGS004703 Hba1c Measurement x x
PGS004671 Total Cholesterol Measurement x x
PGS004708 Serum Albumin Amount x x
PGS003443 Type 2 Diabetes Mellitus x x
PGS004730 Basophil Count x x
PGS004677 Total Cholesterol Measurement x x
PGS004776 High Density Lipoprotein Cholesterol Measurement x x
PGS004648 Low Density Lipoprotein Cholesterol Measurement x x
PGS000030 Prostate Carcinoma x
PGS004725 Asthma x x
PGS004784 Hypercholesterolemia x x
PGS004846 Triglyceride Measurement x x
PGS004706 Atrial Fibrillation x x
PGS004780 Body Height x x
PGS004789 Hypothyroidism x x
PGS004649 Low Density Lipoprotein Cholesterol Measurement x x
PGS003851 Colorectal Cancer x
PGS000023 Type 1 Diabetes Mellitus x
PGS004718 Serum Alanine Aminotransferase Measurement x x
PGS004739 Urea Measurement x x
PGS004670 Total Cholesterol Measurement x x
PGS004807 Neutrophil Count x x
PGS004809 Osteoporosis x x
PGS004729 Basophil Count x x
PGS004808 Neutrophil Count x x
PGS004765 Glaucoma x x
PGS004827 Red Cell Distribution Width x x
PGS005099 Prostate Specific Antigen Amount x x
PGS004728 Basophil Count x x
PGS004709 Serum Albumin Amount x x
PGS004684 Body Height x x
PGS004705 Atrial Fibrillation x x
PGS004767 Gout x x
PGS004847 Triglyceride Measurement x x
PGS003850 Colorectal Cancer x
PGS000662 Prostate Carcinoma x
PGS004810 Osteoporosis x x
PGS004825 Red Cell Distribution Width x x
PGS004707 Serum Albumin Amount x x
PGS004639 Low Density Lipoprotein Cholesterol Measurement x x
PGS004829 Systolic Blood Pressure x x
PGS004672 Total Cholesterol Measurement x x
PGS004759 Major Depressive Disorder x x
PGS004641 Low Density Lipoprotein Cholesterol Measurement x x
PGS003397 Breast Carcinoma x x
PGS004777 High Density Lipoprotein Cholesterol Measurement x x
PGS004799 Migraine Disorder x x
PGS004635 High Density Lipoprotein Cholesterol Measurement x x
PGS003726 Coronary Artery Disease x x
PGS002308 Type 2 Diabetes Mellitus x x
PGS004848 Triglyceride Measurement x x
PGS004736 Body Mass Index x x
PGS004830 Systolic Blood Pressure x x
PGS003439 Colorectal Cancer x x
PGS004630 High Density Lipoprotein Cholesterol Measurement x x
PGS004816 Prostate Carcinoma x x
PGS004791 Low Density Lipoprotein Cholesterol Measurement x x
PGS004850 Total Blood Protein Measurement x x
PGS004626 High Density Lipoprotein Cholesterol Measurement x x
PGS003766 Prostate Carcinoma x x
PGS004737 Breast Carcinoma x x
PGS004664 Triglyceride Measurement x x
PGS004753 Smoking Status Measurement x x
PGS004894 Estrogen-Receptor Positive Breast Cancer x x
PGS003446 Coronary Artery Disease x x
PGS004805 Neutrophil Count x x
PGS004751 Smoking Status Measurement x x
PGS004779 Body Height x x
PGS004831 Systolic Blood Pressure x x
PGS004858 Leukocyte Quantity x x
PGS004710 Serum Albumin Amount x x
PGS004634 High Density Lipoprotein Cholesterol Measurement x x
PGS005101 Prostate Specific Antigen Amount x x
PGS004679 Total Cholesterol Measurement x x
PGS000733 Prostate Carcinoma x
PGS004823 Erythrocyte Count x x
PGS004702 Hba1c Measurement x x
PGS004761 Eosinophil Count x x
PGS004742 Urea Measurement x x
PGS004820 Rheumatoid Arthritis x x
PGS004798 Migraine Disorder x x
PGS004734 Body Mass Index x x
PGS004854 Venous Thromboembolism x x
PGS004665 Triglyceride Measurement x x
PGS004717 Serum Alanine Aminotransferase Measurement x x
PGS004673 Total Cholesterol Measurement x x
PGS004681 Total Cholesterol Measurement x x
PGS004834 Melanoma x x
PGS004727 Basophil Count x x
PGS004787 Hypertension x x
PGS004658 Triglyceride Measurement x x
PGS004746 Coronary Artery Disease x x
PGS004676 Total Cholesterol Measurement x x
PGS004853 Venous Thromboembolism x x
PGS004632 High Density Lipoprotein Cholesterol Measurement x x
PGS004666 Triglyceride Measurement x x
PGS004769 Hemoglobin Measurement x x
PGS004844 Total Cholesterol Measurement x x
PGS004818 Rheumatoid Arthritis x x
PGS004715 Serum Alanine Aminotransferase Measurement x x
PGS004824 Erythrocyte Count x x
PGS004828 Red Cell Distribution Width x x
PGS004835 Stroke x x
PGS004888 Coronary Artery Disease x x
PGS004624 High Density Lipoprotein Cholesterol Measurement x x
PGS004785 Hypertension x x
PGS004778 High Density Lipoprotein Cholesterol Measurement x x
PGS004817 Rheumatoid Arthritis x x
PGS004661 Triglyceride Measurement x x
PGS004822 Erythrocyte Count x x

Counts by trait

This table shows the number of unique publications, the number of unique PRS developed, and the number of unique PRS evaluated for each trait. The table counts results only from PRIMED publications that have a record in the PGS Catalog.

The columns in this table represent the following counts:

  • Publications: The number of PRIMED publications that developed or evaluated PRS for the listed trait
  • PRS developed: The number of unique PRS developed in PRIMED publications for this trait.
  • PRS evaluated: The number of unique PRS evaluated in PRIMED publications for this trait.
  • Sample sets: The number of unique sample sets used for evaluation of PRS for this trait by PRIMED publications.
  • Evaluations: The total number of evaluations for this trait in PRIMED publications. Note that this count can include multiple evaluations of the same PRS in the same sample set, for example with different covariates.
Trait Publications PRS developed PRS evaluated Sample sets Evaluations
Alkaline Phosphatase Measurement 1 4 4 2 4
Aspartate Aminotransferase Measurement 1 4 4 2 4
Asthma 2 5 5 7 9
Atrial Fibrillation 2 2 3 2 3
Basophil Count 1 4 4 2 4
Bilirubin Measurement 1 2 2 1 2
Body Height 2 9 9 1 9
Body Mass Index 1 4 4 2 4
Breast Carcinoma 4 7 8 4 8
Chronic Kidney Disease 2 2 2 5 6
Colorectal Cancer 4 3 6 7 21
Coronary Artery Disease 8 12 15 26 68
Diastolic Blood Pressure 1 4 4 1 4
Eosinophil Count 1 4 4 1 4
Erythrocyte Count 1 4 4 1 4
Estrogen-Receptor Negative Breast Cancer 1 1 1 1 1
Estrogen-Receptor Positive Breast Cancer 1 1 1 1 1
Glaucoma 1 2 2 1 2
Gout 1 2 2 1 2
Hba1c Measurement 1 4 4 2 4
Hematocrit 1 4 4 1 4
Hemoglobin Measurement 1 2 2 1 2
High Density Lipoprotein Cholesterol Measurement 3 20 20 5 20
Hypercholesterolemia 1 2 2 1 2
Hypertension 1 4 4 1 4
Hypothyroidism 1 2 2 1 2
Leukocyte Quantity 1 4 4 1 4
Low Density Lipoprotein Cholesterol Measurement 2 19 19 4 19
Major Depressive Disorder 1 2 2 1 2
Melanoma 1 4 4 1 4
Migraine Disorder 1 4 4 1 4
Monocyte Count 1 4 4 1 4
Neutrophil Count 1 4 4 1 4
Non-High Density Lipoprotein Cholesterol Measurement 1 1 1 1 1
Osteoporosis 1 2 2 1 2
Platelet Count 1 4 4 1 4
Preeclampsia 1 2 2 1 2
Prostate Carcinoma 7 5 8 12 33
Prostate Specific Antigen Amount 2 6 6 15 44
Red Cell Distribution Width 1 4 4 1 4
Rheumatoid Arthritis 1 4 4 1 4
Serum Alanine Aminotransferase Measurement 1 4 4 2 4
Serum Albumin Amount 1 4 4 2 4
Serum Creatinine Amount 1 4 4 2 4
Smoking Status Measurement 1 4 4 1 4
Stroke 1 2 2 1 2
Systolic Blood Pressure 2 5 5 2 5
Total Blood Protein Measurement 1 4 4 1 4
Total Cholesterol Measurement 3 20 20 3 20
Triglyceride Measurement 3 20 20 5 20
Type 1 Diabetes Mellitus 1 0 2 6 12
Type 2 Diabetes Mellitus 6 10 11 15 20
Urea Measurement 1 4 4 2 4
Uterine Fibroid 1 1 1 1 3
Venous Thromboembolism 1 2 2 1 2

Ancestry information

Key

This table shows the ancestry groups as defined by PGS Catalog that will be used later in this document.

Abbreviation Ancestry
MAE Multi-ancestry (including European)
MAO Multi-ancestry (excluding European)
AFR African
EAS East Asian
SAS South Asian
ASN Additional Asian Ancestries
EUR European
GME Greater Middle Eastern
AMR Hispanic or Latin American
OTH Additional Diverse Ancestries
NR Not Reported

Please see the PGS Catalog Ancestry documentation for more information.

Ancestry groups used to develop PRS in PRIMED publications

This table shows the ancestry groups in which PRS have been developed by PRIMED publications. “Stage” represents the stage at which that ancestry group was included: “gwas” means the samples in which the summary statistics used to derive the PRS were created; and “dev” means the samples used to train the PRS model. The entry for each PGS and ancestry category is the percentage of samples from that ancestry category that contributed.

trait pgs_id stage MAE MAO AFR EAS SAS ASN EUR GME AMR OTH NR
Alkaline Phosphatase Measurement PGS004711 dev 100%
PGS004712 dev 100%
PGS004713 dev 100%
PGS004714 dev 100%
Aspartate Aminotransferase Measurement PGS004719 dev 100%
PGS004720 dev 100%
PGS004721 dev 100%
PGS004722 dev 100%
Asthma PGS002727 gwas 5% 3% 89% 1%
dev 100%
PGS004723 dev 100%
PGS004724 dev 100%
PGS004725 dev 100%
PGS004726 dev 100%
Atrial Fibrillation PGS004705 dev 100%
PGS004706 dev 100%
Basophil Count PGS004727 dev 100%
PGS004728 dev 100%
PGS004729 dev 100%
PGS004730 dev 100%
Bilirubin Measurement PGS004731 dev 100%
PGS004732 dev 100%
Body Height PGS004682 gwas 100%
dev 100%
PGS004683 gwas 100%
dev 100%
PGS004684 gwas 100%
dev 100%
PGS004685 gwas 100%
dev 100%
PGS004686 gwas 100%
dev 100%
PGS004779 dev 100%
PGS004780 dev 100%
PGS004781 dev 100%
PGS004782 dev 100%
Body Mass Index PGS004733 dev 100%
PGS004734 dev 100%
PGS004735 dev 100%
PGS004736 dev 100%
Breast Carcinoma PGS003396 gwas 100%
PGS003397 gwas 100%
PGS003398 gwas 100%
PGS003399 gwas 100%
PGS004737 dev 100%
PGS004738 dev 100%
PGS004893 gwas 7% 92%
Chronic Kidney Disease PGS002237 dev 100%
PGS004889 gwas 100%
dev 4% 1% 1% 84% 0% 6% 1%
Colorectal Cancer PGS002252 gwas 1% 18% 80%
PGS003439 gwas 36% 63%
dev 100%
PGS003852 gwas 72% 27%
Coronary Artery Disease PGS003446 gwas 13% 80% 5%
PGS003725 gwas 100%
dev 100%
PGS003726 gwas 100%
dev 100%
PGS003727 gwas 100%
dev 100%
PGS004696 gwas 7% 19% 70% 2%
dev 5% 19% 64% 11%
PGS004697 gwas 4% 11% 82% 1%
dev 100%
PGS004698 gwas 7% 19% 70% 2%
dev 5% 19% 64% 11%
PGS004743 dev 100%
PGS004744 dev 100%
PGS004745 dev 100%
PGS004746 dev 100%
PGS004888 gwas 100%
dev 4% 1% 1% 84% 0% 6% 1%
Diastolic Blood Pressure PGS004755 dev 100%
PGS004756 dev 100%
PGS004757 dev 100%
PGS004758 dev 100%
Eosinophil Count PGS004761 dev 100%
PGS004762 dev 100%
PGS004763 dev 100%
PGS004764 dev 100%
Erythrocyte Count PGS004821 dev 100%
PGS004822 dev 100%
PGS004823 dev 100%
PGS004824 dev 100%
Estrogen-Receptor Negative Breast Cancer PGS004895 gwas 7% 92%
Estrogen-Receptor Positive Breast Cancer PGS004894 gwas 7% 92%
Glaucoma PGS004765 dev 100%
PGS004766 dev 100%
Gout PGS004767 dev 100%
PGS004768 dev 100%
Hba1c Measurement PGS004701 dev 100%
PGS004702 dev 100%
PGS004703 dev 100%
PGS004704 dev 100%
Hematocrit PGS004771 dev 100%
PGS004772 dev 100%
PGS004773 dev 100%
PGS004774 dev 100%
Hemoglobin Measurement PGS004769 dev 100%
High Density Lipoprotein Cholesterol Measurement PGS002781 gwas 6% 8% 2% 79% 2%
PGS004622 gwas 100%
dev 100%
PGS004623 gwas 100%
dev 100%
PGS004624 gwas 100%
dev 100%
PGS004625 gwas 100%
dev 100%
PGS004626 gwas 100%
dev 100%
PGS004627 gwas 100%
dev 100%
PGS004628 gwas 100%
dev 100%
PGS004629 gwas 100%
dev 100%
PGS004630 gwas 100%
dev 100%
PGS004631 gwas 100%
dev 100%
PGS004632 gwas 100%
dev 100%
PGS004633 gwas 100%
dev 100%
PGS004634 gwas 100%
dev 100%
PGS004635 gwas 100%
dev 100%
PGS004636 gwas 100%
dev 100%
PGS004775 dev 100%
PGS004776 dev 100%
PGS004777 dev 100%
PGS004778 dev 100%
Hypercholesterolemia PGS004783 dev 100%
PGS004784 dev 100%
Hypertension PGS004785 dev 100%
PGS004786 dev 100%
PGS004787 dev 100%
PGS004788 dev 100%
Hypothyroidism PGS004789 dev 100%
PGS004790 dev 100%
Leukocyte Quantity PGS004855 dev 100%
PGS004856 dev 100%
PGS004857 dev 100%
PGS004858 dev 100%
Low Density Lipoprotein Cholesterol Measurement PGS004637 gwas 100%
dev 100%
PGS004638 gwas 100%
dev 100%
PGS004639 gwas 100%
dev 100%
PGS004640 gwas 100%
dev 100%
PGS004641 gwas 100%
dev 100%
PGS004642 gwas 100%
dev 100%
PGS004643 gwas 100%
dev 100%
PGS004644 gwas 100%
dev 100%
PGS004645 gwas 100%
dev 100%
PGS004646 gwas 100%
dev 100%
PGS004647 gwas 100%
dev 100%
PGS004648 gwas 100%
dev 100%
PGS004649 gwas 100%
dev 100%
PGS004650 gwas 100%
dev 100%
PGS004651 gwas 100%
dev 100%
PGS004791 dev 100%
PGS004792 dev 100%
PGS004793 dev 100%
PGS004794 dev 100%
Major Depressive Disorder PGS004759 dev 100%
PGS004760 dev 100%
Melanoma PGS004795 dev 100%
PGS004796 dev 100%
PGS004833 dev 100%
PGS004834 dev 100%
Migraine Disorder PGS004797 dev 100%
PGS004798 dev 100%
PGS004799 dev 100%
PGS004800 dev 100%
Monocyte Count PGS004801 dev 100%
PGS004802 dev 100%
PGS004803 dev 100%
PGS004804 dev 100%
Neutrophil Count PGS004805 dev 100%
PGS004806 dev 100%
PGS004807 dev 100%
PGS004808 dev 100%
Non-High Density Lipoprotein Cholesterol Measurement PGS002782 gwas 6% 8% 2% 79% 2%
Osteoporosis PGS004809 dev 100%
PGS004810 dev 100%
Platelet Count PGS004811 dev 100%
PGS004812 dev 100%
PGS004813 dev 100%
PGS004814 dev 100%
Preeclampsia PGS003586 gwas 0% 21% 78% 0%
dev 100%
PGS003587 gwas 0% 6% 91% 1%
dev 100%
Prostate Carcinoma PGS003460 gwas 16% 10% 69% 3%
PGS003765 gwas 100%
PGS003766 gwas 100%
PGS004815 dev 100%
PGS004816 dev 100%
Prostate Specific Antigen Amount PGS003378 gwas 3% 3% 89% 3%
PGS003379 gwas 3% 3% 89% 3%
PGS005098 dev 19% 1% 71% 7%
PGS005099 dev 15% 1% 75% 6%
PGS005100 dev 19% 1% 71% 7%
PGS005101 dev 15% 1% 75% 6%
Red Cell Distribution Width PGS004825 dev 100%
PGS004826 dev 100%
PGS004827 dev 100%
PGS004828 dev 100%
Rheumatoid Arthritis PGS004817 dev 100%
PGS004818 dev 100%
PGS004819 dev 100%
PGS004820 dev 100%
Serum Alanine Aminotransferase Measurement PGS004715 dev 100%
PGS004716 dev 100%
PGS004717 dev 100%
PGS004718 dev 100%
Serum Albumin Amount PGS004707 dev 100%
PGS004708 dev 100%
PGS004709 dev 100%
PGS004710 dev 100%
Serum Creatinine Amount PGS004747 dev 100%
PGS004748 dev 100%
PGS004749 dev 100%
PGS004750 dev 100%
Smoking Status Measurement PGS004751 dev 100%
PGS004752 dev 100%
PGS004753 dev 100%
PGS004754 dev 100%
Stroke PGS004835 dev 100%
PGS004836 dev 100%
Systolic Blood Pressure PGS003588 gwas 100%
dev 100%
PGS004829 dev 100%
PGS004830 dev 100%
PGS004831 dev 100%
PGS004832 dev 100%
Total Blood Protein Measurement PGS004849 dev 100%
PGS004850 dev 100%
PGS004851 dev 100%
PGS004852 dev 100%
Total Cholesterol Measurement PGS002783 gwas 6% 8% 2% 79% 2%
PGS004667 gwas 100%
dev 100%
PGS004668 gwas 100%
dev 100%
PGS004669 gwas 100%
dev 100%
PGS004670 gwas 100%
dev 100%
PGS004671 gwas 100%
dev 100%
PGS004672 gwas 100%
dev 100%
PGS004673 gwas 100%
dev 100%
PGS004674 gwas 100%
dev 100%
PGS004675 gwas 100%
dev 100%
PGS004676 gwas 100%
dev 100%
PGS004677 gwas 100%
dev 100%
PGS004678 gwas 100%
dev 100%
PGS004679 gwas 100%
dev 100%
PGS004680 gwas 100%
dev 100%
PGS004681 gwas 100%
dev 100%
PGS004841 dev 100%
PGS004842 dev 100%
PGS004843 dev 100%
PGS004844 dev 100%
Triglyceride Measurement PGS002784 gwas 6% 8% 2% 79% 2%
PGS004652 gwas 100%
dev 100%
PGS004653 gwas 100%
dev 100%
PGS004654 gwas 100%
dev 100%
PGS004655 gwas 100%
dev 100%
PGS004656 gwas 100%
dev 100%
PGS004657 gwas 100%
dev 100%
PGS004658 gwas 100%
dev 100%
PGS004659 gwas 100%
dev 100%
PGS004660 gwas 100%
dev 100%
PGS004661 gwas 100%
dev 100%
PGS004662 gwas 100%
dev 100%
PGS004663 gwas 100%
dev 100%
PGS004664 gwas 100%
dev 100%
PGS004665 gwas 100%
dev 100%
PGS004666 gwas 100%
dev 100%
PGS004845 dev 100%
PGS004846 dev 100%
PGS004847 dev 100%
PGS004848 dev 100%
Type 2 Diabetes Mellitus PGS002308 gwas 2% 16% 81%
PGS003443 gwas 100%
dev 100%
PGS003444 gwas 100%
dev 100%
PGS003445 gwas 100%
dev 100%
PGS004837 dev 100%
PGS004838 dev 100%
PGS004839 dev 100%
PGS004840 dev 100%
PGS004859 gwas 13% 3% 81% 1%
PGS004887 gwas 13% 3% 82% 1%
dev 4% 1% 1% 84% 0% 6% 1%
Urea Measurement PGS004739 dev 100%
PGS004740 dev 100%
PGS004741 dev 100%
PGS004742 dev 100%
Uterine Fibroid PGS002263 gwas 100%
dev 100%
Venous Thromboembolism PGS004853 dev 100%
PGS004854 dev 100%
PGS004770

Ancestry groups used for evaluating PRS in PRIMED publications

This table shows the ancestry groups in which PRS have been evaluated by PRIMED publications. The entry for each PGS and ancestry category is the number of evaluations that have been done for that specific PGS in that specific ancestry category. Note that a PRS can be evaluated multiple times in the same sample set, e.g., with different covariates.

trait pgs_id MAE MAO AFR EAS SAS ASN EUR GME AMR OTH NR
Alkaline Phosphatase Measurement PGS004711 1
PGS004712 1
PGS004713 1
PGS004714 1
Aspartate Aminotransferase Measurement PGS004719 1
PGS004720 1
PGS004721 1
PGS004722 1
Asthma PGS002727 1 1 1 1 1
PGS004723 1
PGS004724 1
PGS004725 1
PGS004726 1
Atrial Fibrillation PGS000016 1
PGS004705 1
PGS004706 1
Basophil Count PGS004727 1
PGS004728 1
PGS004729 1
PGS004730 1
Bilirubin Measurement PGS004731 1
PGS004732 1
Body Mass Index PGS004733 1
PGS004734 1
PGS004735 1
PGS004736 1
Breast Carcinoma PGS000007 1
PGS003396 1
PGS003397 1
PGS003398 1
PGS003399 1
PGS004737 1
PGS004738 1
PGS004893 1
Chronic Kidney Disease PGS002237 1 1 1 1
PGS004889 2
Colorectal Cancer PGS000765 1
PGS002252 6
PGS003439 2
PGS003850 1 1 1 1
PGS003851 1 1 1 1
PGS003852 1 1 1 1
Coronary Artery Disease PGS000013 1 4 4 4
PGS000018 4 4 4
PGS001355 1
PGS003446 1 1 1
PGS003725 2 1 2 2 1
PGS003726 1 1 1 1
PGS003727 1 1 1 1 2
PGS004696 1 1 1 1 1
PGS004697 1 1 1 1 1
PGS004698 1 1 1 1 1
PGS004743 1
PGS004744 1
PGS004745 1
PGS004746 1
PGS004888 2
Estrogen-Receptor Negative Breast Cancer PGS004895 1
Estrogen-Receptor Positive Breast Cancer PGS004894 1
Hba1c Measurement PGS004701 1
PGS004702 1
PGS004703 1
PGS004704 1
High Density Lipoprotein Cholesterol Measurement PGS002781 1
PGS004622 1
PGS004623 1
PGS004624 1
PGS004625 1
PGS004626 1
PGS004627 1
PGS004628 1
PGS004629 1
PGS004630 1
PGS004631 1
PGS004632 1
PGS004633 1
PGS004634 1
PGS004635 1
PGS004636 1
Low Density Lipoprotein Cholesterol Measurement PGS004637 1
PGS004638 1
PGS004639 1
PGS004640 1
PGS004641 1
PGS004642 1
PGS004643 1
PGS004644 1
PGS004645 1
PGS004646 1
PGS004647 1
PGS004648 1
PGS004649 1
PGS004650 1
PGS004651 1
Non-High Density Lipoprotein Cholesterol Measurement PGS002782 1
Preeclampsia PGS003586 1
PGS003587 1
Prostate Carcinoma PGS000030 1 3
PGS000662 7 7 3
PGS000733 3
PGS003460 1
PGS003765 1 1
PGS003766 2 2
Prostate Specific Antigen Amount PGS003378 3 1 2 2
PGS003379 3 1 2 2
PGS005098 2 1 2 1 1
PGS005099 2 1 2 1 1
PGS005100 2 1 2 1 1
PGS005101 2 1 2 1 1
Serum Alanine Aminotransferase Measurement PGS004715 1
PGS004716 1
PGS004717 1
PGS004718 1
Serum Albumin Amount PGS004707 1
PGS004708 1
PGS004709 1
PGS004710 1
Serum Creatinine Amount PGS004747 1
PGS004748 1
PGS004749 1
PGS004750 1
Systolic Blood Pressure PGS003588 1
Total Cholesterol Measurement PGS002783 1
PGS004667 1
PGS004668 1
PGS004669 1
PGS004670 1
PGS004671 1
Triglyceride Measurement PGS002784 1
PGS004652 1
PGS004653 1
PGS004654 1
PGS004655 1
PGS004656 1
PGS004657 1
PGS004658 1
PGS004659 1
PGS004660 1
PGS004661 1
PGS004662 1
PGS004663 1
PGS004664 1
PGS004665 1
PGS004666 1
Type 1 Diabetes Mellitus PGS000023 2 2 1
PGS000024 2 1 4
Type 2 Diabetes Mellitus PGS000014 1
PGS002308 5 3 1 1
PGS003443 1
PGS003444 1
PGS003445 1
PGS004859 1
PGS004887 1
Urea Measurement PGS004739 1
PGS004740 1
PGS004741 1
PGS004742 1
Uterine Fibroid PGS002263 3
Total 14 3 50 29 44 8 60 20 10

The following plot shows the relative number of evaluations for each ancestry category from the “Total” row in the table above.

A treemap plot showing the relative number of PRS evaluations by ancestry category as follows: MAE: 14, MAO: 3, AFR: 50, EAS: 29, SAS: 44, ASN: 8, EUR: 60, AMR: 20, OTH: 10

Publications

This table shows the list of publications that mapped to the PGS catalog and were used for reporting in this document. More information about each publication can be found on the PRIMED consortium website.

pmid pgp_id Title First author
39930085 PGP000692 Genome-wide association study of prostate-specific antigen levels in 392,522 men identifies new loci and improves prediction across ancestry groups. Hoffmann TJ
38671457 PGP000619 Polygenic scores for longitudinal prediction of incident type 2 diabetes in an ancestrally and medically diverse primary care physician network: a patient cohort study. Mandla R
38508198 PGP000604 Integrative polygenic risk score improves the prediction accuracy of complex traits and diseases. Truong B
38622117 PGP000595 An ensemble penalized regression method for multi-ancestry polygenic risk prediction. Zhang J
38380516 PGP000602 Multi-Ancestry Polygenic Risk Score for Coronary Heart Disease Based on an Ancestrally Diverse Genome-Wide Association Study and Population-Specific Optimization. Smith JL
37945903 PGP000488 Characterizing prostate cancer risk through multi-ancestry genome-wide discovery of 187 novel risk variants Wang A
38938725 PGP000695 Polygenic Background Modifies Risk of Coronary Artery Disease Among Individuals With Heterozygous Familial Hypercholesterolemia. Reeskamp LF
37011137 PGP000506 Genetic and Clinical Factors Underlying a Self-Reported Family History of Heart Disease. Jowell A
37783704 PGP000492 Combining Asian and European genome-wide association studies of colorectal cancer improves risk prediction across racial and ethnic populations. Thomas M
37353344 PGP000605 Type 2 Diabetes Polygenic Score Predicts the Risk of Glucocorticoid-Induced Hyperglycemia in Patients Without Diabetes. Deutsch AJ
37414900 PGP000466 A multi-ancestry polygenic risk score improves risk prediction for coronary artery disease. Patel AP
38014910 PGP000715 Polygenic Risk Score Modifies Prostate Cancer Risk of Pathogenic Variants in Men of African Ancestry. Hughley RW
36872133 PGP000453 Evidence of Novel Susceptibility Variants for Prostate Cancer and a Multiancestry Polygenic Risk Score Associated with Aggressive Disease in Men of African Ancestry. Chen F
37148359 PGP000445 The power of TOPMed imputation for the discovery of Latino-enriched rare variants associated with type 2 diabetes. Huerta-Chagoya A
37264206 PGP000412 Genetically adjusted PSA levels for prostate cancer screening. Kachuri L
37248299 PGP000462 Polygenic prediction of preeclampsia and gestational hypertension. Honigberg MC
36622766 PGP000441 Validation of a genetic-enhanced risk prediction model for colorectal cancer in a large community-based cohort. Su YR
36745605 PGP000477 Polygenic Scores Help Reduce Racial Disparities in Predictive Accuracy of Automated Type 1 Diabetes Classification Algorithms. Deutsch AJ
36575460 PGP000366 Implicating genes, pleiotropy, and sexual dimorphism at blood lipid loci through multi-ancestry meta-analysis. Kanoni S
36126957 PGP000380 Association of Prostate-Specific Antigen Levels with Prostate Cancer Risk in a Multiethnic Population: Stability over Time and Comparison with Polygenic Risk Score. Chou A
36343017 PGP000415 Polygenic risk scores for prediction of breast cancer in Korean women. Jee YH
35226188 PGP000291 Uterine fibroid polygenic risk score (PRS) associates and predicts risk for uterine fibroid. Piekos JA
35595084 PGP000335 Multiancestral polygenic risk score for pediatric asthma. Namjou B
36100952 PGP000373 Testing the generalizability of ancestry-specific polygenic risk scores to predict prostate cancer in sub-Saharan Africa. Kim MS
35554533 PGP000621 Polygenic risk scores for prediction of breast cancer risk in women of African ancestry: a cross-ancestry approach. Gao G
35915156 PGP000446 Large-scale genome-wide association study of coronary artery disease in genetically diverse populations. Tcheandjieu C
35710995 PGP000269 Genome-wide polygenic score to predict chronic kidney disease across ancestries. Khan A
35765100 PGP000331 Development and validation of a trans-ancestry polygenic risk score for type 2 diabetes in diverse populations. Ge T
35437332 PGP000381 Development of a clinical polygenic risk score assay and reporting workflow. Hao L
35026030 PGP000279 Risk Stratification for Early-Onset Colorectal Cancer Using a Combination of Genetic and Environmental Risk Scores: An International Multi-Center Study. Archambault AN